GgaEX1003086 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr1:75600454-75601712:+
Coord C1 exon
chr1:75600454-75600498
Coord A exon
chr1:75600810-75600954
Coord C2 exon
chr1:75601660-75601712
Length
145 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTTCAATTTGACAGTCA
3' ss Score
6.35
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTGCCAAAGTTAAATTCCTTGGAAACAGATGCTTCAGCTACACAA
Seq A exon
TCAGAAGAGGTGGTTTTTCTTCATGTCCTGATACGCAGCAGTGACAGTGTGCTCTTTGAGGGTTACAAGAAGGTTTTGGTCAAGCCCCAGGAAAGCATAATTCTGATAGAGACAGACAAGGCCTTCTACAAACCTGGAGAAACAG
Seq C2 exon
TGAAATTTCGAATCGTGAGCCTTGATGATGACCTTATGGTCATTAAAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014252_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0183514=A2M_N=PU(17.4=32.7)
C2:
PF0183514=A2M_N=FE(18.5=100)
Main Inclusion Isoform:
ENSGALT00000023051fB4206
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCAAAGTTAAATTCCTTGGA
R:
ATAAGGTCATCATCAAGGCTCACG
Band lengths:
82-227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]