GgaEX1003111 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NIC1]
Coordinates
chr10:7105216-7109561:+
Coord C1 exon
chr10:7105216-7105333
Coord A exon
chr10:7106212-7106323
Coord C2 exon
chr10:7109452-7109561
Length
112 bp
Sequences
Splice sites
3' ss Seq
ATAATTTTTTGTGTCTCTAGTTT
3' ss Score
7.69
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
GATTATATTATGGATTCTCCACCAGATGCACCAGATAATACATCTGGTATACTGTTTGGTGTGAGACAGAACTCGGGAGTTCCACAGTACCAGACTGAGCCAACAGTGAGTGTAACAG
Seq A exon
TTTAGGTATTCACTGCAGCTACTGATCAGTGAAGGCAGTATATTTCTTTGCATGTGTCCAACTAATCTGTGATCTGATTCTCGTCTTAGTGGAACAAACAGCTTTTTCTAAA
Seq C2 exon
ACACAAATACTGCATCAAGCAACATTAAGAATGGAGGGCCGTTTCCACGAGCTTGTCCAAAGTGCAATATTCATTTCAATCTTATGGATCCTCTAAAAAATCATATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014375_MULTIEX1-2/16=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.585 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF138361=DUF4195=FE(24.2=100)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTCTCCACCAGATGCACC
R:
TTGAAATGAATATTGCACTTTGGACA
Band lengths:
186-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]