GgaEX1003175 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr1:77917404-77919939:-
Coord C1 exon
chr1:77919827-77919939
Coord A exon
chr1:77919680-77919732
Coord C2 exon
chr1:77917404-77919506
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTTCCCATGTTTGCCACAAGTGC
3' ss Score
3.11
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTCTCTCTGCCATATGATTCACAGTTTTATTGGGTTGGATTATCATACATATCTGAAAGGAATGGCTGGTTCTGGGAGGATGGAACAGCTCTTTCAACTGAAGCCAAAACTTG
Seq A exon
TGCAGTCATGAAGGAGCATGGAGATGATCATATCTGCTATAGGGCTATCAACA
Seq C2 exon
GACTGTATTACGCGAGCACACCTTCTGTGCCTCCTTATATGGACAGATTATTTATGCCAGTAACTCCTGTTCGACAAAGCAATCCTGGATCTGTGAGAAAGGAGCTGTCCAATTTGCCTGAAGAAGCACTGTGAGAAGGAATGTGGGCTGTCTGACTGTTAGATACCATTTCTAGGAACTGGGTGTTTTAAATGTAGTTTTATTTTTGTTTGTTTATCACGCAGCTTTCTCAGAATGTTAATTCAAATAGGCAGGTCAATAGAGACTAAAACTTCCTCTTTGCCTGCACCTAGGCTCATAAATGAAAGAAAAATACTACAAAGCTAAAAGCTACAAGCCTAGGAAGCAAGTTTAAAGGGTTAGCAACAGTCAAGTAATAATTCTTACATGAATCTCTAGAAGGAAAACCACACATTCTCACAGAGCCATATATTTCTTGTGCTTCTGTTAGAATTTCTCCTTTCCTCAGCATTCTACAGCTGTCAGTCATAGACCACTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014722_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.000 C2=0.071
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(55.4=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(33.3=80.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAATGGCTGGTTCTGGGA
R:
GTCGAACAGGAGTTACTGGCA
Band lengths:
132-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]