GgaEX1003598 @ galGal3
Exon Skipping
Gene
ENSGALG00000016690 | F1NFF7_CHICK
Description
NA
Coordinates
chr3:111590234-111591803:+
Coord C1 exon
chr3:111590234-111590396
Coord A exon
chr3:111590561-111590710
Coord C2 exon
chr3:111591643-111591803
Length
150 bp
Sequences
Splice sites
3' ss Seq
GTTTTAATTTTCCATTTCAGGTG
3' ss Score
12.38
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
CTGTCTGAAACGTATGGCCCAGTCTTCACAGTTCAGATGGGAATGAGGAAAGTTGTGGTGCTGTCAGGATATGACACAGTGAAGGAAGCTCTGGTGAATCATGCAGATGCATTTGTAGGGAGACCTAAAATACCAATCGTGGAAAAAGCAGGAAAAGGAAAAG
Seq A exon
GTGTTGTATTTTCTAGTGGAGAAAACTGGAAAGTGATGAGAAGATTTACTCTTACAACCTTACGAGACTTTGGGATGGGAAAGAAGGCCATAGAAGACTATGTTGTAGAGGAGTATGGATACCTGGCAGACGTAATTGAGTCACAGAAAG
Seq C2 exon
GGAAGCCCCTTGAGATGACTCACTTGATGAATTCTGCTGTTGCTAATGTCATTGTATCCATATTGCTTGGAAAACGGTTTGAATATGAAGACCCCACATTCAAAAGACTTGTGTCACTGATAAATGAAAATATGAGGCTTTTTGGAAGTCCATCAGTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016690-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
PF0006717=p450=FE(10.9=100)
C2:
PF0006717=p450=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCAGTCTTCACAGTTCAG
R:
TGGGGTCTTCATATTCAAACCGT
Band lengths:
244-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]