GgaEX1003721 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr1:178330992-178334840:-
Coord C1 exon
chr1:178334552-178334840
Coord A exon
chr1:178333352-178333448
Coord C2 exon
chr1:178330992-178331155
Length
97 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTATATCTTTTCCAGTAA
3' ss Score
8.63
5' ss Seq
AATGTATGT
5' ss Score
5.87
Exon sequences
Seq C1 exon
ATTCTTGGATATCCCAGTCAGCTTCGTTCCCTAGGAATCAAAAGCAACCAGGTGTGGATTCTTTATCACCAGTAGCATCACTACCCAAGCAGATCTTCCAGCCTTCTACTCAGCAGCCACCGCCGTCTAAACAGGTTAAAGTTACATGTGCAAACTGCAAAAAGCCTTTGCAAAAGGGACAGACTGCTTATCAACGGAAAGGATCAGCTCATCTTTTTTGTTCTACTACCTGCCTCTCATCATTCTCACACAAACCCGCTCCAAAGAAACTTTGTGTCATGTGCAGAAA
Seq A exon
TAAAATCTCAGTCTGGTACATCCTGTTCTGACACTAATTGAATGATTAATTTCTACCAAACTACAGAAGACTTCTAGTAAAGACTGCCTTTGTTAAT
Seq C2 exon
ATATAACAACAATGAAAGGTACCATCGTTGCTCAAGTTGATTCAAGTGAGTCTTTCCAGGAGTTCTGCAGTACATCATGTTTATCCTTCTATGAAGATAAACAGAACCCTTCAAAAGGAGCTTTGAATAAGTCAAGATGCACTATCTGTGGTAAACTAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.473 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=42.3),PF064679=zf-FCS=PU(28.9=13.4)
A:
NO
C2:
PF064679=zf-FCS=PD(68.9=55.4),PF064679=zf-FCS=PU(40.0=28.6)
Main Inclusion Isoform:
ENSGALT00000043420fB4317
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACAGACTGCTTATCAACGG
R:
GCAGAACTCCTGGAAAGACTCA
Band lengths:
182-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]