GgaEX1003804 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C4W1]
Coordinates
chr8:25585857-25587593:-
Coord C1 exon
chr8:25587406-25587593
Coord A exon
chr8:25586753-25586891
Coord C2 exon
chr8:25585857-25585957
Length
139 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTCTCTTGTCTCAGGGC
3' ss Score
11.3
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
CCCGTGTGCAAGCTGAGATCGATGCTGTCATTGGGCAGGCCCGGCAGCCGTCCCTGGAGGACAGGAACAACATGCCCTACACCAATGCCGTCATCCATGAAGTGCAGAGGAAAGGCAACATCATCCCTTTCAATGCATTGAGACTGACAGTGAAAGACACAGTCTTGGCTGGTTTCCGGGTATCCAAG
Seq A exon
GGCACTATTTTGATCCCAAATCTGTCCTCTGTGATGTATGACAAGAAGGAGTGGGAAACCCCTCACAGTTTTAACCCTGGGCATTTCCTGAAGGACGGTCAGTTCTGGAAAAGGGAGGCTTTTATGCCATTTTCTATAG
Seq C2 exon
AAATTCACCTTCCAGGCTCCCCCGGACACCATCCTTGACTTCAAATTCACCATGGGCATCACCTTGGCCCCCCGGCCCTACAAGATCTGCGCAGTGCCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018634-'12-19,'12-17,13-19
Average complexity
S
Mappability confidence:
89%=75=40%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.7=100)
A:
PF0006717=p450=FE(10.2=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTGCAAGCTGAGATCGAT
R:
CAAGGTGATGCCCATGGTGAA
Band lengths:
252-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]