GgaEX1003826 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr14:15221467-15223125:-
Coord C1 exon
chr14:15223024-15223125
Coord A exon
chr14:15221949-15222076
Coord C2 exon
chr14:15221467-15221566
Length
128 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTAATTCACTTCAAGGAT
3' ss Score
5.76
5' ss Seq
GGGGTCAGT
5' ss Score
3.99
Exon sequences
Seq C1 exon
GTTGTAGACAAAAATGCTAATATTCTGCCTCCTGGACAACAAGGGGAAATTGCTATCAGAAGCAAACCTGTAAGACCACTTGGTTTATTCACTGAATATGTA
Seq A exon
GATAACCCTAAGAAAACTACAGAAAGCGAGCGTGGGGATTTTTACATCACAGGGGACAGAGCGACTATGGATGAAGATGGATATTTTTGGTTTATTGGAAGAGACGACGATATCATCATTTCTTCGGG
Seq C2 exon
GTATCGCATTGGGCCATTTGAGGTAGAGAGTGCCCTGATAGAACACCCAGCAGTAGCAGAAACAGCTGTTGTCAGCAGTCCAGATCCCCTCAGAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.186 C2=0.059
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.9=100)
A:
PF0050123=AMP-binding=PD(9.8=95.3)
C2:
PF131931=AMP-binding_C=PU(32.1=76.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAAATGCTAATATTCTGCCTCCT
R:
TCTCCTCTGAGGGGATCTGGA
Band lengths:
194-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]