GgaEX1003935 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BVL4]
Coordinates
chr2:498988-501531:-
Coord C1 exon
chr2:501403-501531
Coord A exon
chr2:501178-501312
Coord C2 exon
chr2:498988-500661
Length
135 bp
Sequences
Splice sites
3' ss Seq
CCCCACCTCTGCCCTTGTAGCAC
3' ss Score
8.12
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
AGCCCGTTGGTCCTGGCTGTGCGAGCAGTGAAGCCCTGCTGCAAGTGGAGACAGAGCAGTCTCCTAAGGGGAGATGCAGGAACCCGGAGGACAGCAGGAGCCCATCGGATGCACCTGACAGTAGTGCAC
Seq A exon
CACACGTTCCTCAGGAAGCCATAGGTGCTCCAGCAGACCTCAGCCACCCAGCTGCCTCCCGTCCCTGCCCCATCCCCACGTGCTGCCAGGAAGTGCTGACCCTGAGCCTGCCTCCGTCTCCTCCCCCTGCAGCAG
Seq C2 exon
CAGGTGCCGACGTGGGGATCCCAGGAGAGGTCCTGCAGGAGGGGATCGGCGCCGAGGAGGGTCTGCAAAAGGAGGACGTGGGAGGTGCAGGGAACCGTGGCCAGTATCCAGCAGCAGATGCTCCTGCAGAGCCGAGCAGGGAGGAGATGCCAGACCTTTGCCAAACAGCAGCACGTGTGGAGCCCGGCGGCTCGGCTGGCCTGCTGGGAAAGCCAGAGGAGAGCGTGGGCAGAACTGCTGCCTGCCAGCGAAACTCCTCCCGGGAGAAGTTCTACAGGTGCATGGTGTGCGGGAAGAACTTCCTGCTCAAGATCAACCTCATCATCCACCAGAAGAGCCACAGCAACTGGGTGCCCTACGTCTGCATCGAGTGCGACCAGGCCTTCACGTCCAAGAAGAAGATCAGGTGCCACCTGCGGATCCGGGCGGCCACGGGGTTCTGCCCACCCTCCGGCACCGAGGGGGGCTCCAGCCTGGCGCCCTGCAGGGCTGCTCAGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019710_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=0.783 C2=0.339
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=8.9),PF0009621=zf-C2H2=WD(100=7.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAAGTGGAGACAGAGCAG
R:
GCAAAGGTCTGGCATCTCCTC
Band lengths:
252-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]