GgaEX1004027 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr8:22595023-22596334:+
Coord C1 exon
chr8:22595023-22595167
Coord A exon
chr8:22595855-22595899
Coord C2 exon
chr8:22596207-22596334
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTCCCCTCTTTCTTTTACAGATC
3' ss Score
14.18
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
TTTCTCAAAGAAGAAGATGTGCTGGAAAAGGCAGAGGCATGGGCACTGAAGTACCAACATGCCCACCCTATCTGGTTTGGGGGTTTCTCGGCAGTCCTGGTGATCAACGATCCTGAATATGCCAAAGCCCTTTTTGCCAGAGGAG
Seq A exon
ATCCCAAGGATAACCTCAGCTATAAGCACCTTATCCCATGGATTG
Seq C2 exon
GGAATGGCTTGCTGATCCTGCATGGGCCCAAATGGCACCAACATCGGAAGCTCCTGACACCAGGCTTTCATTACGACGTCTTGAAGCCTTATGTAGCCCTCATGGCAGAGTCTACCAATGTGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020688-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(26.8=100)
A:
PF0006717=p450=FE(8.4=100)
C2:
PF0006717=p450=FE(23.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCCCACCCTATCTGGTT
R:
GTCAGGAGCTTCCGATGTTGG
Band lengths:
147-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]