GgaEX1004153 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr18:7960319-7961569:-
Coord C1 exon
chr18:7961526-7961569
Coord A exon
chr18:7961181-7961339
Coord C2 exon
chr18:7960319-7960419
Length
159 bp
Sequences
Splice sites
3' ss Seq
GTGGTGTTGTTCATTACCAGGCA
3' ss Score
7.1
5' ss Seq
TCGGTAAAA
5' ss Score
5.48
Exon sequences
Seq C1 exon
CAGGAGAATAATGGGAAGAGTGGCCTCAGGCTCTGTGCTGAAGG
Seq A exon
GCATAGCACTAGAAGAGGCAGTAAACGAGCAAAACCTGTCAGCAAGAGGACTTTTTAGGAGTGATGTGATCGGTGTTGTTTTTAAGGATGACTTCTCCTACCACCTCAGATTTCAGAGCTACAGCGTGATATCTCCCATTGAAACCTTTGAACACATCG
Seq C2 exon
ATACCTGCTATGATTTCTCATCGTCCTTTTGCAAGGTTCCTTTGTACTGGTATGAGGGATTCCTGTCCGTTCAGTCCAGCATTGATGCAGCAGTCATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023373-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(25.7=85.2)
C2:
PF126982=ABC2_membrane_3=FE(18.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAATAATGGGAAGAGTGGCC
R:
CTCTATGACTGCTGCATCAATG
Band lengths:
143-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]