GgaEX1004482 @ galGal4
Exon Skipping
Description
Gallus gallus MHC-like class I Y (LOC768350), mRNA. [Source:RefSeq mRNA;Acc:NM_001184719]
Coordinates
JH375207.1:7101-7516:-
Coord C1 exon
JH375207.1:7484-7516
Coord A exon
JH375207.1:7293-7325
Coord C2 exon
JH375207.1:7101-7120
Length
33 bp
Sequences
Splice sites
3' ss Seq
CTGCTCTCCCTCCCTTGCAGGCC
3' ss Score
12.41
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGATGGAGAAGAAGGATTACGAAGCAGCACCAG
Seq A exon
GCCACGATGAGGTATCCAGCAGCTCGGCCACAG
Seq C2 exon
GAAGTGAACTTTCCATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024340_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.917 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]