GgaEX1004483 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NFX9]
Coordinates
chr16:368047-369245:+
Coord C1 exon
chr16:368047-368079
Coord A exon
chr16:368238-368270
Coord C2 exon
chr16:368444-369245
Length
33 bp
Sequences
Splice sites
3' ss Seq
CTGCTCTCCCTCCCTTGCAGGCC
3' ss Score
12.41
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGAAGGAGAAGAAGGGTTATGAAGCAGCAGCAG
Seq A exon
GCCACGATGAGGTATCCAGCGGCTCGGCCACAG
Seq C2 exon
GAAGTGAACCTTCCATCTGAGTGCTGTGCTGCTTCAGCCAGACCTGCATGCACGTGTTTGGAGTTTGTGGGTGTGTGCATCTCTGTTTGCTCAACTTCCTGCATCTCCTCGGGCTGATGCAGTGTGTGCTCCCCTGCTCACACACTGTTTCCAACAGTTAGCACATGGGTTCTGCCCTGTGCTAGGCTCTCTCCTACCATGTAGGATTATCTTACCCGGTGCCTGTGCCAACTGTACTCAAGTCGGAATGCCCCAGTCTCAACTTTGTTCAGCAGCTTTCTTTGTGAAAAGCAGCTCTCAGTGCTGTGCTCATTGTAGTCAGCCATTAGCTTCAAAACCTTGTTGGGCAGCTCATGCCTTGTATGGGTGCTGCTGACCAGGCTTTGAGCCAAGCTGGCATGGTTTTGTAATTTTGCCATTGGTATTCCACATCATAGCATCATGGACAGCCGGGTAATTACAGGGTTAATAGTCCGGTTCTGTGGACTGACAACCTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024348-'10-15,'10-14,11-15
Average complexity
S
Mappability confidence:
57%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGTTATGAAGCAGCAGCA
R:
GCAAACAGAGATGCACACACC
Band lengths:
112-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]