GgaEX1004663 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9L3V2]
Coordinates
chr16:407381-408309:+
Coord C1 exon
chr16:407381-407756
Coord A exon
chr16:407852-408124
Coord C2 exon
chr16:408208-408309
Length
273 bp
Sequences
Splice sites
3' ss Seq
ACAACGTCACCCATCTGCAGAAC
3' ss Score
6.92
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
CCTCCGATCCTGAGCCCACCCACCCCATCCCAGCCCCACAGCACTCCTGGTGCCCCACAGCCCATGAAGCCTCTCACCCCCCACCCCTGCTGTGCCTCAGGGTCTCACACGCTGCAGAAGATGATCGGCTGTGACATCCTGGAGGACGGCAGCATCCGAGGGTACGTTCAGTATGCATTTGATGGGAGGGACTTCCTCGCCTTTGATATGGACACGATGACGTTCACCGCGGCGGATCCAGTGGCAGAAATCACCAAGAGGAGGTGGGAGGAGGAAGGGATATATACTGAGGGATGCAAGCATGAGCTGGGGACCATCTGCGTCCAGAACTTGAGGAGATACCTGGAACACGGAAAGGCAGTGCTGAAAAGGAGAG
Seq A exon
AACGGCCTGAGGTGCGCGTGTGGGGGAAGGAGGCCAACGGGATCCTGACTTTGTCCTGCCGCGCTTATGGCTTCTACCCGCGGCGCATTGCCATCAGCTGGATGAAGGACGGCATGGTCCGGGACCAGGAGACCCACTGGGGGGGCATCGTGCCCAACAGCGATGGCACCTACCACGCCTCGGCTGCCATTGATGTGCTGCCGAAGGATGTGGACAAGTATTGGTGCCGCGTGGAGCACACCAGCCTGCCCCAGCCTGGCCTCTTCTCATGGG
Seq C2 exon
AGCTGCAGCCCAACCTGACTCCTTCTGTGGCCGGGGCAGTCGGCGCCATCGTGGCTGTCATCGCTGCTGTCGTTGGAGTCGTGGTGTGGAAGAGCAAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026466-'4-6,'4-3,5-6
Average complexity
S
Mappability confidence:
100%=100=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.206 A=0.033 C2=0.000
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(0.1=0.0),PF0012913=MHC_I=WD(100=74.6)
A:
PF0765410=C1-set=WD(100=87.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGCTGCAGAAGATGATCG
R:
GCCACAGAAGGAGTCAGGTTG
Band lengths:
301-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]