GgaEX1004666 @ galGal4
Exon Skipping
Description
NA
Coordinates
JH376268.1:50140-54436:-
Coord C1 exon
JH376268.1:53849-54436
Coord A exon
JH376268.1:50460-50532
Coord C2 exon
JH376268.1:50140-50220
Length
73 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTGTGTCTCTTCCAGCTG
3' ss Score
12.6
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AATGGATGGGAAGGACGGATGGATAATAGGGATAAATTGGTGGGATGGGTGGAAGGATAAGAAGGATGGGAAGAAAAGATGGATAAATGGGCTGGTGGGACAGACAGACGAGGGGGCTGAATGGATGGACAGAGAGAAAGGACAGACGGATAGAAAGAGAAGAATAGAGGGATAGAAAGGGTACGTAGATGGGGAGAAGAGATAGGAAGGACGGACAGAAAGGACGGAGGTGAGGAGGGATGGAAAAGGAAGAGATGTGGAATGCAGTGTGTGGGGAAGGACAGATGGAGGGAAAGGGCGGATGGAAAGGAGGGGTGGGGAGAAGGGATGGGTAGGCAGGAAGGGCACAGATGGATGGGAAGGACAGACGGGTAGGAATGTCACACGGGGAAGGACGGACGGATGGGAAGGATGGATGGATGGGAAGGGCAGATAGACAGGAAAGACAGATTGGAAGGACAGACGGATGCAAAGGACAGGCAGGCAGGAAGGACAAACAG
Seq A exon
CTGTGTCCCACACGTGTGTCCCTCTTCCCTCACCATGTACGCCTGTACAAAGTTCGTCACTGTTCCTGCGCTG
Seq C2 exon
GTGTGGAGGAGCCCGCGGGTGCTGTGCCAGCCTCTCTCAGCCTCCCTGCTCAGCATATCCAATGCACGGATGGAGCAGGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026530_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGGATGGATGGATGGGA
R:
GCTCCATCCGTGCATTGGATA
Band lengths:
172-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]