GgaEX1004964 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GKY0]
Coordinates
AADN03012381.1:21-4640:+
Coord C1 exon
AADN03012381.1:21-153
Coord A exon
AADN03012381.1:677-1000
Coord C2 exon
AADN03012381.1:2686-4640
Length
324 bp
Sequences
Splice sites
3' ss Seq
TGCAATTGCATTTGATGCAGGTG
3' ss Score
6.4
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
CAAGGAACTGGAACAATTTGGTTGGATGACGTGAACTGTGCAGGATCTGAAACTGCCCTCACTGAGTGCCCAGCCAAGCCTTGGGGAGACCACAACTGTAACCATGGAGAGGATGCTGGTGTGGTGTGCTCAG
Seq A exon
GTGCTGCTGAACCAGCTCCCATCCGGCTTGTGAATGGTCCGAGCCATTGTGCTGGGAGAGTCGAGGTGTTTCATGATCGTCAGTGGGGAACCGTATGTGATGACAACTGGGATAAAGCAGAAGCCAATGTTGTGTGCAGGCAGCTGGGCTGTGGGGCAGCGCTATCAGCCCCTGGCTCAGCTCGCTTTGGACAAGGGTCTGACCCCATCTGGCTGGATGATGTCAATTGTGTAGGGACAGAGGCTGCCCTCTCCCAGTGCCGGTTCCCAGGCTGGGGATCCCATAACTGCAAACATGGAGAAGATGCTGGTGTGGTGTGTTCAG
Seq C2 exon
ACATACCAAGAGCTGCTCCACTGCAGTTAACAAATGGGCCGAGTCGCTGCAGTGGGGAGAGTTGAAGTTTTTTACGGCCATCAGTGGGGAACCGTGTGTGATGACAACTGGGACATAAGTGATGCTGAAGTTGTTTGCCAGCAGCTGGGCTGTGGGAGGGCTCTATCCACTGCAACTTCAGCTTCTTTTGGAGAAGGGTCTGGCCCAATCTGGCTGGATGACGTGAATTGCACAGGAGCTGAAACTAGCCTTTCCCAAATGTGAGACCAGTCTGTGGGGAGCCCATAACTGTAATCATGGAGAAGATGCCGGTGTTGTGTGCTTGGGTAAGTCTCATTTATGCTACTTTCTGACTGAGGTTTAAGGTATGTGGAGGAATGCTTGAAACGCCACTGGGTGCCCTTTCCCCATCTTACGACTCTAAAACCAGAGTACCGAACGGAAAAAATGCTGCTGGTCGGATGTGTGTGAATCCAGTGGTGTTCCCCTTTCCTCCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028082_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=97.8)
A:
PF0053013=SRCR=WD(100=89.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGATCTGAAACTGCCCTC
R:
GGCTAGTTTCAGCTCCTGTGC
Band lengths:
344-668
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]