GgaEX1004993 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZS3]
Coordinates
AADN03010737.1:21-627:-
Coord C1 exon
AADN03010737.1:595-627
Coord A exon
AADN03010737.1:406-438
Coord C2 exon
AADN03010737.1:21-220
Length
33 bp
Sequences
Splice sites
3' ss Seq
CGGCTCACCCTCCCTTGCAGGCC
3' ss Score
9.18
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGAAGGAGAAGAAGGGTTACGAAGCAGCGCCAG
Seq A exon
GCCACGACGGAGAATCCAGCATATCGGCCACAG
Seq C2 exon
GAAGTGAACCTTCCATCTGATTGCTGTGCTGCTTCAGCCAGCCCTGCATGCACGTGTTTGGAGTTTGTGGGTGTGTGTATCTCCGTTTGCTCGACTCCTGCATCTCCTCGGGCTGACGCAGTGTGTGCTCCTCTGCTCTACTCTGTGCGTTATTTCCTGGGGATGACCCATTGAAAGTGTCCACCTCGTGAGCAGAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028268_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=1.000 C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGGGTTACGAAGCAGCG
R:
AGGAGTCGAGCAAACGGAGAT
Band lengths:
124-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]