GgaEX1005100 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GMH5]
Coordinates
chr3:44668690-44669851:+
Coord C1 exon
chr3:44668690-44668764
Coord A exon
chr3:44668870-44668947
Coord C2 exon
chr3:44669711-44669851
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTTTGCTTGCTGATCTTGAGGGA
3' ss Score
-6.71
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
TACCAACATGCATCATTGCGCTGGCACTCTGATACATCCACAATGGGTCCTTACTGCAGCTCAGTGCTTGCAAGA
Seq A exon
GGATAGTTTCTTGGCCTGTGCTACACCTGCACCATGTCTCCAAGTTAAAGCAAGAAAGCAGCATCTCTAATGTCCAAA
Seq C2 exon
GTCAGTAGAGCCCTCTTCCTATAGGATTTTTCTTGGGATACAGAACCTAAATGCAGAAGAGCCATCCCTGCAAATCCGAAGTGTTCACAAATTACTGAAGGAACCCAGCGGAGCAGACATCGCTCTGCTAAAACTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028886-'15-15,'15-14,16-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.4=100)
A:
PF0008921=Trypsin=PD(30.6=79.2)
C2:
PF0008921=Trypsin=FE(21.4=100)
Main Inclusion Isoform:
ENSGALT00000044267fB4525
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGGCACTCTGATACATCC
R:
TCCGCTGGGTTCCTTCAGTAA
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]