GgaEX1005105 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GHE8]
Coordinates
chrLGE64:522451-525410:+
Coord C1 exon
chrLGE64:522451-522774
Coord A exon
chrLGE64:523298-523621
Coord C2 exon
chrLGE64:525310-525410
Length
324 bp
Sequences
Splice sites
3' ss Seq
TGCAATTGCATTTGATGCAGGTG
3' ss Score
6.4
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GACTTGCTGAGCTTCTTCCAGTCCGGCTGGTGAATGGTTCCAATTTCTGCTCTGGAAGAGTCGAGGTGTTTCATGAGCAGCAATGGGGGACTGTCTGTGATGACAGCTGGGATTTAACAGATGCTCAAGTGGTGTGCAGGCAGCTGGGCTGTGGGGAAGCCACCTCAGCCACTGGCTCTGCTCGGTTTGGACAAGGAACTGGAACAATTTGGTTGGATGACGTGAACTGTGCAGGATCTGAAACTGCCCTCACTGAGTGCCCAGCCAAGCCTTGGGGAGACCACAACTGTAACCATGGAGAGGATGCTGGTGTGGTGTGCTCAG
Seq A exon
GTGCTGCTGAACCAGCTCCCATCCGGCTTGTGAATGGTCCGAGCCATTGTGCTGGGAGAGTCGAGGTGTTTCATGATCGTCAGTGGGGAACCGTATGTGATGACAACTGGGATAAAGCAGAAGCCAATGTTGTGTGCAGGCAGCTGGGCTGTGGGGCAGCGCTATCAGCCCCTGGCTCAGCTCGCTTTGGACAAGGGTCTGACCCCATCTGGCTGGATGATGTCAATTGTGTAGGGACAGAGGCTGCCCTCTCCCAGTGCCGGTTCCCAGGCTGGGGATCCCATAACTGCAAACATGGAGAAGATGCTGGTGTGGTGTGTTCAG
Seq C2 exon
ACATACCAAGAGCTGTTCCACTGCGGTTAATAAATGGGACGAGTCGCTGCAGTGGGAGAGTTGAAGTTTTTTACGGCCAAAAGGGGGGAACCGTGTGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028894-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
57%=100=50%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=89.9)
A:
PF0053013=SRCR=WD(100=89.9)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCTCTGGAAGAGTCGAGG
R:
CTTCAACTCTCCCACTGCAGC
Band lengths:
345-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]