GgaEX1005386 @ galGal4
Exon Skipping
Gene
ENSGALG00000005752 | ABCA4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N8D7]
Coordinates
chr8:12604682-12608770:+
Coord C1 exon
chr8:12604682-12604747
Coord A exon
chr8:12605342-12605443
Coord C2 exon
chr8:12608677-12608770
Length
102 bp
Sequences
Splice sites
3' ss Seq
ACTATTTCTGTAATTTGCAGGGA
3' ss Score
9.09
5' ss Seq
AAGGTTGTT
5' ss Score
2.39
Exon sequences
Seq C1 exon
ATGAACTTCCTTAGGCAAGTCAGACTTCTACTCTGGAAGAACTGGATCCTCCGAAAAAGACAAAAG
Seq A exon
GGAAAGCTTCCTTTGATCTGCTATAGAGAAAGACTGCCAGTTCAAATTGAAAATAATGAAGGAGTACTCTTGGTGAAGTGTGCAGCTGGAGCAGTCAAGAAG
Seq C2 exon
CTTCGTATTCTGGTGGAGCTTATATGGCCTCTGTCATTATTTCTTGCCCTGGTCTGGCTGAGGAAAGCTAATCCACTGTATCGCCAACATGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000009238fB4558
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCTTAGGCAAGTCAGACT
R:
TCATGTTGGCGATACAGTGGA
Band lengths:
154-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]