GgaEX1006354 @ galGal4
Exon Skipping
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6921784-6922608:+
Coord C1 exon
chr17:6921784-6921988
Coord A exon
chr17:6922140-6922224
Coord C2 exon
chr17:6922296-6922608
Length
85 bp
Sequences
Splice sites
3' ss Seq
TCGTTATTTCCATCTTACAGGTG
3' ss Score
10.7
5' ss Seq
CAAGTCAGT
5' ss Score
2.74
Exon sequences
Seq C1 exon
ATGGAAGGTAACCCCGGGTGGCCCCTGTTCCTCCAGCTGTGGGCTTGGCTTATCTGTTCAGCTGGTCACCTGTGTGCAGATTCAGCAAGGCAAAGAGATTTTGCTGGAGCAGCATTCATGTCCTGTGTCAGAGAAGCCCCTTACTACCATTCCCTGTGTCATCCGAATGTGTTCTTATGAATGGAGCTTCAGTGAATGGACAGAG
Seq A exon
GTGATGAAACTAAAGAACTGAAAAGTCAGGTGGTAGAACAGCATCAGTGAACAAAAGATCAGAATTCTGGATCACGCTTGAGCAA
Seq C2 exon
TGTTCAACTTCATGTGGGAATGGTGTTCAGACACGGCACAATTTCTGCCTCAACCGGCTCACTCATAAGCACGTGAACCCCATCTTCTGCAGGCGCTTCCCCAAGGCCATTGTGCTGCGTGGCTGCTCTGCAGGGCCCTGTCCTGAGCAGGGGGTGGACTCCAGGTTGCATGGAGCAGAACTGCAGACAGTGACACCAGCCATGCATCTGATGACTACTGCAGATGCTGAAGGGCCAAGATACAAAGGCCTGATTCTTCCTTCATCTGCTCTGCCAGCTGTCCTTCAGGAACAGATAAAAGAGACCAGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(18.4=10.1)
A:
NO
C2:
PF0009014=TSP_1=PD(76.3=27.6)
Main Inclusion Isoform:
ENSGALT00000004792fB4716
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCAGATTCAGCAAGGCAA
R:
GCAGAAATTGTGCCGTGTCTG
Band lengths:
181-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]