GgaEX1007054 @ galGal4
Exon Skipping
Gene
ENSGALG00000002041 | AGRN
Description
agrin [Source:RefSeq peptide;Acc:NP_990858]
Coordinates
chr21:2710090-2711114:-
Coord C1 exon
chr21:2710910-2711114
Coord A exon
chr21:2710662-2710791
Coord C2 exon
chr21:2710090-2710221
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTCGGTTGCGGTATATCCAGGTC
3' ss Score
3.74
5' ss Seq
GGGGTTTGT
5' ss Score
1.06
Exon sequences
Seq C1 exon
GGGGAATGGAGCGGCTCAGCGTGGCTCACAAGCTGCCCAAGGCTTACAGCACTGGCTTTATTGGCTGTATAAGGGACGTGATTGTCGACCGCCAAGAACTGCATCTGGTGGAGGACGCTTTAAACAACCCCACGATATTACACTGCTCAGCCAAATAGACCCCCAGGGACCCTTCCTTCTCCTTCCCTTCCTCCTGCCTATTGCT
Seq A exon
GTCAGTCAGACTCTAATCGAGCGGCAGCAACAAAGAACAAACCTTGAACCAAGTCTCCAAGAAGTGACAGAAGAAGTTCCCCATTGCACCTGTGTTGTAAATCTCACTCATACTTGAAGCTTATTTTGGG
Seq C2 exon
ACTTGTCCTCACCACCTGCTTGCCCTGGCTGCTCTTCCGAGAGCTTCTGTGCCCCAAACCGTGCACCACTGACAACTTGCAACGTGTCCTCAGGAGCTGGGGGTCCCCTCCTTCCAGCACCGACTGCGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0005418=Laminin_G_1=PD(25.8=64.2)
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAAGGCTTACAGCACTG
R:
ACGTTGCAAGTTGTCAGTGGT
Band lengths:
256-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]