GgaEX1007221 @ galGal4
Exon Skipping
Gene
ENSGALG00000013404 | AK8
Description
adenylate kinase 8 [Source:HGNC Symbol;Acc:HGNC:26526]
Coordinates
chr17:6682725-6689879:-
Coord C1 exon
chr17:6689790-6689879
Coord A exon
chr17:6688627-6688790
Coord C2 exon
chr17:6682725-6682789
Length
164 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTTTTGCACAATAGTTT
3' ss Score
5.73
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
TTTGCTGTGGGCAACTGCTAAAGGAAGCTGTTGCAGACAAGACAAAACTTGGAGAACTCGTTAAGCCTTATATTGACAACGGATACCCAG
Seq A exon
TTTAATTCTGTGACTGAATTACATAGATCTGAAACATGAGCCTATAAAATTAACTGATGTTCCCTCGATACCATATGAAGAGATTCAGTACTTTCCTAAGCATTTCAAAAAGACCTTCGGCAGCCTGCAGCTTTGAGTATTCTATCCCTCCATCAAACCACAAG
Seq C2 exon
AAGCTGAAGGAGTAAGAAGCAGTGTTGCAAATACACGATTTCCTGCCAGCTTGAGAAACTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013404-'15-14,'15-13,16-14
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(28.0=100)
A:
PF0040617=ADK=PD(0.1=0.0)
C2:
NA
Main Inclusion Isoform:
ENSGALT00000021862fB4863
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAACTGCTAAAGGAAGCT
R:
TGCAAGTTTCTCAAGCTGGCA
Band lengths:
146-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]