GgaEX1007962 @ galGal4
Exon Skipping
Gene
ENSGALG00000027521 | ANKRD33B
Description
ankyrin repeat domain 33B [Source:HGNC Symbol;Acc:HGNC:35240]
Coordinates
chr2:78180064-78185059:-
Coord C1 exon
chr2:78184930-78185059
Coord A exon
chr2:78182629-78182868
Coord C2 exon
chr2:78180064-78180204
Length
240 bp
Sequences
Splice sites
3' ss Seq
ATGGATATTATATATTACAGGGT
3' ss Score
4.42
5' ss Seq
GGAGTATCC
5' ss Score
-5.73
Exon sequences
Seq C1 exon
AATGGTCTCATCGTCGCCTGTTACCAAGGGTATGTGGATATTGTCATAGCCTTATCACAGTGCCCTCACCTCGATGTGAACTGGCAGGACAATGAAGGGAACACGGCCCTGATCACAGCTGCGCAGGCAG
Seq A exon
GGTCCAGTCTGGGGCAGGCTCTTGAAACACAAATCACGAAGCAGGTGATTTCTTTGCATAAATGGAGACATGAGAATGCAACTACCTCAGACATCCAGATCATGACGACTGTGCATCTTCAGTTTTACTTGTCTGCCAGAAAGCATTCAATGCCTGTAGATCAAATGCAGGCTATCTGGAAACATGAGTCACGTCCAAGCGGTGACACTGTATGATAGATCATCCTCCTTACTACACGGA
Seq C2 exon
GGCACATAACCATTACAAACTATTTGTTGAACTATTTCCCTGGGCTTGACATTGAGAAGAGGAATGTGTTTGGATTTACAGCACTGATGAAATCTGCGATGCAGGGACGAACGGAATGCGTGAAAGCCTTGATGATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027521_MULTIEX1-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.141 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(42.7=93.2)
A:
PF127962=Ank_2=PD(4.9=5.6)
C2:
PF127962=Ank_2=FE(49.0=100)
Main Inclusion Isoform:
ENSGALT00000044518fB4976
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTCTCATCGTCGCCTGTT
R:
GCCATCATCAAGGCTTTCACG
Band lengths:
268-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]