GgaEX1009419 @ galGal4
Exon Skipping
Gene
ENSGALG00000002558 | ASL1
Description
Delta-1 crystallin [Source:UniProtKB/Swiss-Prot;Acc:P02521]
Coordinates
chr19:4945969-4946528:-
Coord C1 exon
chr19:4946448-4946528
Coord A exon
chr19:4946248-4946352
Coord C2 exon
chr19:4945969-4946075
Length
105 bp
Sequences
Splice sites
3' ss Seq
GCCTTCTGTTCTGTCCCCAGGTG
3' ss Score
14.09
5' ss Seq
CAGGTGGAA
5' ss Score
1.62
Exon sequences
Seq C1 exon
GTCAACAAGGAGAACATGGAGAAGGCTCTGACCCCTGAGTTGCTGTCTACTGATCTGGCTCTCTACTTGGTTCGTAAAGGA
Seq A exon
GTGATGGTCAGTGTGGGTCAACAAACACGAGAGCTGGAAACACATTCTTTACATGTATCCCAAGTAGTGGAACTGCTGCCGGGTGGACTTGATAGTAATTTACAG
Seq C2 exon
ATGCCAATCAGACAAGCCCAAACTGCTTCTGGGAAGGCCGTCCACCTTGCTGAGACTAAAGGCATCACCATCAATAATCTCACCCTGGAGGACCTGAAGAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002558-'17-17,'17-16,18-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF146981=ASL_C2=PU(20.0=51.9)
A:
PF146981=ASL_C2=PU(6.7=11.4)
C2:
PF146981=ASL_C2=FE(50.0=100)
Main Inclusion Isoform:
ENSGALT00000039936fB5188
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACAAGGAGAACATGGAGAAGG
R:
TGATGCTCTTCAGGTCCTCCA
Band lengths:
186-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]