GgaEX1009620 @ galGal4
Exon Skipping
Gene
ENSGALG00000009287 | ATF2
Description
Cyclic AMP-dependent transcription factor ATF-2 [Source:UniProtKB/Swiss-Prot;Acc:O93602]
Coordinates
chr7:16201202-16203477:+
Coord C1 exon
chr7:16201202-16201331
Coord A exon
chr7:16202232-16202387
Coord C2 exon
chr7:16203296-16203477
Length
156 bp
Sequences
Splice sites
3' ss Seq
ATCTCTTCTACCCTGTGTAGCTC
3' ss Score
7.61
5' ss Seq
ACGGTAGAT
5' ss Score
5.18
Exon sequences
Seq C1 exon
CATTTAAATCTCATCTTTTTTTGAGGATAAGGAGGATTCTGCCACCAAGAGAATCGGGGATCAGCAAAAAGGAAAAGATGATTGGAAGGTTGAGATTCATAGAAGAAACAAGTCTCAAGGGGAGTATCAG
Seq A exon
CTCAACTTTGTATAGAATCATAGAATCACAAGGTTTGAAAGGACCTACAAGATCATCTGGTCCAACCATCCTCCCATTACCATAAGTAGCACAAGGTGGTACAGAAGAGTTAAAATTAAAGTTGATCTTCACTCCAAGTTGAAAGTGTGAACAACG
Seq C2 exon
CTGCAGATAAAGATGACAGTTCAGAAGACATCTCAGTGCCAAGCAGCCCACACACGGAAGCTATTCAGCACAGCTCCGTCAGCACTTCCAACGGTGTAAGCTCCACTTCCAAGGCAGAGGCGGTGGCCACCTCAGTGCTCACGCAGCTGGCGGACCAGAGCTCGGAGCCCGGGCTTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009287-'30-38,'30-37,31-38
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000033263fB5220
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGATTCTGCCACCAAGA
R:
TGAGCACTGAGGTGGCCA
Band lengths:
242-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]