GgaEX1009622 @ galGal4
Exon Skipping
Gene
ENSGALG00000009287 | ATF2
Description
Cyclic AMP-dependent transcription factor ATF-2 [Source:UniProtKB/Swiss-Prot;Acc:O93602]
Coordinates
chr7:16155320-16159504:+
Coord C1 exon
chr7:16155320-16155905
Coord A exon
chr7:16159056-16159169
Coord C2 exon
chr7:16159461-16159504
Length
114 bp
Sequences
Splice sites
3' ss Seq
ATTGCCTTCTTCCTCCCCAGAAC
3' ss Score
11.31
5' ss Seq
GAGGTTTGC
5' ss Score
3.52
Exon sequences
Seq C1 exon
ACTTCGTTTCTGTGCAAGTCCTCCGAGCCGTGCTGCACAGCGTGCCGGGCTGTGGAAGGAGCACTGTTTGGCTTGGCTGTCCTCGCACGTGTGCTGTCCAGATGTGGCCGCTGGAACGTTAAGCTGGCCACATTCACTCATCCTTGGCAAGAAGTAGTAGGGCTGTGACTGCTCTGGACGCTGGACGGAAGCGTAACGCCCACCTCCTCCTCGGAGCCGCCGCCGTGCTCGGCGTGGTCACCCATCCACGTGCGCACCGAGCGGCACCTGCTTAGCCGCAGCCACACCCAGACACCCGCCGCTTCCGGCCACACAGGCAGCCGCAGCCGCCCCGTCGGCGGCGCCCAATCCGCGGCGTCCCCGCCCTTCGCCCCGCCCCTCTGCGCCACGTGACCTGCGTTCCGCCGGGCCCGCGGAGATGTCGGCGGTGCTCTCGCGAGAAGTGACGGAAGCCTGTGGGGGACCCGGCCTTTCATGTGCGGCGCGGCCCGCGTTCCCGG
Seq A exon
AACTCTCTGAAACAGACCGCGTGACTTCAAGGAAGTGGAACAACCGCTCCACTAAGCAGTACAGTGGCAGTGTTGAAGAAGGAGCCCCCATTCTCCTCTTGGCCAGTTCTTGAG
Seq C2 exon
GAAACTGAAAAGAAAAAAAAAAGAAGTTGTTGCAGTCCTTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009287_MULTIEX1-1/3=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCACACCCAGACAC
R:
AGAAGGACTGCAACAACTTCT
Band lengths:
265-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]