GgaEX1009730 @ galGal4
Exon Skipping
Gene
ENSGALG00000008515 | ATL2
Description
atlastin GTPase 2 [Source:HGNC Symbol;Acc:HGNC:24047]
Coordinates
chr3:15777293-15778572:-
Coord C1 exon
chr3:15778516-15778572
Coord A exon
chr3:15778170-15778307
Coord C2 exon
chr3:15777293-15777364
Length
138 bp
Sequences
Splice sites
3' ss Seq
ATAACTTGCTATTCTGTCAGTGT
3' ss Score
4.85
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GCTTACATTAAAATCTATCAAGGAGAGGAGCTACCTCATCCAAAGTCTATGCTGCAG
Seq A exon
TGTCTTTCAGACAGTATTCAGAGGGCTTTTAGTATCAGCTGTAGTAGACAAAATGGAGAAAGATTATAGTAGTGCAGCTAATACTACTGTCTCACAGTGTTGGGCTCCTAACAAACAAACATGTGCAACAAAGATCAG
Seq C2 exon
GCAACAGCTGAGGCAAACAATCTTGCTGCTGTGGCAGGAGCAAAAGACTTGTACAGTAAAGGCATGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008515_MULTIEX1-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF028419=GBP_C=FE(14.0=100)
A:
NO
C2:
PF028419=GBP_C=FE(17.8=100)
Main Inclusion Isoform:
ENSGALT00000013868fB5247
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAAATCTATCAAGGAGAGGAGCT
R:
CTGCTCCATGCCTTTACTGTACA
Band lengths:
122-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]