GgaEX1011197 @ galGal4
Exon Skipping
Gene
ENSGALG00000013295 | BRD4
Description
bromodomain containing 4 [Source:HGNC Symbol;Acc:HGNC:13575]
Coordinates
JH376279.1:28000-34259:-
Coord C1 exon
JH376279.1:34165-34259
Coord A exon
JH376279.1:29580-29696
Coord C2 exon
JH376279.1:28000-28318
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGCTTTGTTTGTTTCATCAGATA
3' ss Score
8.72
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
ATCTTTCTTCCTGCGGTAGCCTCAAAAATGGAGGTGGGAGGGCTTGGCTGGTGAAGGAGCAGCACCCGACACCTCAAAGGGTCGAAGGATTTAAG
Seq A exon
ATACACAATCTAAAGGCATTTGTGCCTGAAGCCACGGAAGATAGATGGACAAGCCAAGCAACTTCTGACCCTGCATCATTTTCTGGGGCAAAATTGTATGGCAATGTATCCTACAAG
Seq C2 exon
GGTGTCTGGTGAGGAATGCAATGGGATCAATAGCATGTCTGCAGAGAGCGGCCCCGGGACGAGACTGAGAAATCTGCCAGTGATGGGCGACGGCCTGGAAGCCACACAGATGTCGACGGCGCAGGCGCAGGCGCAACCCCAGCAAGGCAGCACCGTCGGCGTCAACCCCCCTCCTCCAGAGACCTCCAACCCCAACAAACCCAAGCGGCAGACCAACCAGCTGCAGTACCTGCTCAAAGTGGTGCTCAAAACGCTATGGAAGCACCAGTTTGCGTGGCCTTTCCAGCAGCCCGTGGATGCTGTCAAGCTGAATCTCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013295_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.714 C2=0.664
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0043920=Bromodomain=PU(32.6=26.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCTCAAAGGGTCGAAGGA
R:
GTACTGCAGCTGGTTGGTCTG
Band lengths:
256-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]