GgaEX1011519 @ galGal4
Exon Skipping
Gene
ENSGALG00000028659 | Blec1
Description
C-type lectin domain family 2 member E [Source:RefSeq peptide;Acc:NP_998747]
Coordinates
chr16:104812-106001:-
Coord C1 exon
chr16:105915-106001
Coord A exon
chr16:105255-105427
Coord C2 exon
chr16:104812-104918
Length
173 bp
Sequences
Splice sites
3' ss Seq
CTTTATTCTGTCCATGGCAGTGC
3' ss Score
7.64
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
GTCCCAGCCGTGGGGCGTGCGTTACCTTCCAGCTCACGATGGCAGCAGTGTTCACAGTGCTGCTCATCACTGCTGTTGCCTTTGCAG
Seq A exon
TGCAGGCATTCCAGCCCCATCCCCAGCCCTGTGCTCAGTGTCCCTTCGACTGGATTGGATTCAGAGGAAAATGCTACTACTTTTCAGAGGATGAGAGCAATTGGACGAGCAGCCAGAACAACTGCTCTGCACTTGGTGCTTCCTTGGCTGTGTTTGACAGCGCTGAGGACTTG
Seq C2 exon
AGCTTCACAATGAGACACAAAGGCAGCTCCCCCCACTGGGTTGGCCTCTCCCGGGAAGGCAAAGAGCATCCATGGGAATGGGTGAACCGCTCTCCTTTGTCTCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028659-'3-3,'3-1,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(28.1=46.6)
C2:
PF0005916=Lectin_C=FE(36.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCGTTACCTTCCAGCTCAC
R:
AGGTGAGACAAAGGAGAGCGG
Band lengths:
178-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]