GgaEX1012100 @ galGal4
Exon Skipping
Gene
ENSGALG00000001175 | C4BPA
Description
complement component 4 binding protein, alpha chain precursor [Source:RefSeq peptide;Acc:NP_989995]
Coordinates
chr26:2630929-2632459:+
Coord C1 exon
chr26:2630929-2631014
Coord A exon
chr26:2631369-2631575
Coord C2 exon
chr26:2632277-2632459
Length
207 bp
Sequences
Splice sites
3' ss Seq
ACTTTATGACTTTGTCCTAGGAG
3' ss Score
7.2
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GTACAGGTTACATGGAAATCGTCAGATTTCCTGTGTAATTCAAGGTAAAGTTGTTGACTGGAATGGACCTCTTCCTTTATGTGATA
Seq A exon
GAGTTCCTTGTAAGCCACCTCCAAGTATAGCCAATGGGCGCTACACTGAAGCAGACAACTATGTTTATCAAACAACAGTAACCTATAGTTGTGACAATGTGCGCGCAGGAGAAAATCCCTTCTCGCTGGTTGGTTCACCTTCTATTTTCTGCACAGTTGATGAAAACTCAAATGGTGTTTGGAGTGGACCGCCTCCACAGTGTAAAG
Seq C2 exon
TGGTCATCTGTGACAACCCACAAGTAGAAAACGGAAGAAAGGCATCTGGGTTTGCATCTCAGTATATCTATGGGAGCTCAGTTAGGTTTGAATGTGATCCAGACTATGTCTTGCTTGGGATGGATGTAATTAGTTGTACTGAAAATGGCACCTGGTATCCATCATTACCAACTTGTAAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001175-'12-14,'12-11,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(47.4=90.0)
A:
PF0008415=Sushi=WD(100=92.9)
C2:
PF0008415=Sushi=WD(100=90.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAGGTTACATGGAAATCGTCAGA
R:
TTCTTTTACAAGTTGGTAATGATGGA
Band lengths:
269-476
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]