GgaEX1012547 @ galGal4
Exon Skipping
Gene
ENSGALG00000008591 | CACNB2
Description
calcium channel, voltage-dependent, beta 2 subunit [Source:HGNC Symbol;Acc:HGNC:1402]
Coordinates
chr2:19020382-19022148:-
Coord C1 exon
chr2:19022090-19022148
Coord A exon
chr2:19021302-19021332
Coord C2 exon
chr2:19020382-19020491
Length
31 bp
Sequences
Splice sites
3' ss Seq
TGAGTTAACTGTTTTCCTAGGAA
3' ss Score
6.05
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GTAACAGATATGATGCAAAAAGCATTATTTGATTTTTTAAAACATAGATTCGAAGGGCG
Seq A exon
GAAGAAGAATATGCAGAAGGTTGTGTAGCAG
Seq C2 exon
TATATCAATTACAAGAGTCACAGCAGACATCTCGCTTGCCAAACGCTCAGTATTAAACAACCCCAGTAAGCATGCGATAATAGAGCGATCCAACACAAGATCAAGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008591-'11-16,'11-15,12-16
Average complexity
S
Mappability confidence:
100%=100=75%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.667 C2=0.149
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(10.5=100)
A:
PF0062516=Guanylate_kin=PD(2.7=10.0)
C2:
PF0062516=Guanylate_kin=FE(20.4=100)
Main Inclusion Isoform:
ENSGALT00000013988fB5704
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAAACATAGATTCGAAGGGCG
R:
TGGATCGCTCTATTATCGCATGC
Band lengths:
115-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]