GgaEX1012786 @ galGal4
Exon Skipping
Gene
ENSGALG00000009069 | CAPN14
Description
calpain 14 [Source:HGNC Symbol;Acc:HGNC:16664]
Coordinates
chr3:7646290-7647962:+
Coord C1 exon
chr3:7646290-7646495
Coord A exon
chr3:7647028-7647064
Coord C2 exon
chr3:7647896-7647962
Length
37 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTTTCACATCTCCAGGGA
3' ss Score
10.02
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CAAGAGGAAATCAATCAAAAGCTGCCTCCAGCATTCTTCACCCGGCACCAGCCTGTAAACAAGCGCCAGGTCTTCCTCGATGAACGGGAAGTGACTTGTGACTTCCACCTGGAGCCTGGTGTCTATGTGATTGTGCCATCCACTCTGGAGCCTCATCAGGAGTCTGAATTCATTCTGCGTGTCTTTTCCAGGAAGCACGTCCTTCG
Seq A exon
GGAAATGGGTGGGAACTCCAGTTTCATCCTCTCCAAG
Seq C2 exon
GAAATTGTTGATAGGTATGAAGGCAAGATCTGGGAGGATTTCTTCACAAAACATTTTGAAAAGGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009069_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(43.0=100)
A:
PF0106717=Calpain_III=PD(0.6=7.7)
C2:
NO
Main Inclusion Isoform:
ENSGALT00000014761fB5740
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTGTGCCATCCACTCTGG
R:
TCCTCCCAGATCTTGCCTTCA
Band lengths:
117-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]