GgaEX1013847 @ galGal4
Exon Skipping
Gene
ENSGALG00000008439 | CD36
Description
platelet glycoprotein 4 [Source:RefSeq peptide;Acc:NP_001025902]
Coordinates
chr1:11026429-11040338:-
Coord C1 exon
chr1:11040049-11040338
Coord A exon
chr1:11038289-11038370
Coord C2 exon
chr1:11026429-11026663
Length
82 bp
Sequences
Splice sites
3' ss Seq
ACCCATTGGACACTGGGTAGCTG
3' ss Score
-0.11
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GGCTGTTGTTACTTTTTCCCCAAAACAGAGAAGCCTGGGTGTAATTAGATGGAGGGTGTGTACTCCACCGCAGTGCCTGGGGTTCTTCATCCTGTGCCCTGTCCTCTCAAAGCAAAAGGCAGTGGTGAAGGATACAGCCTATTACCTTTCTAGCTGTTGTGGGATGGAAGGGCACTGCACTGCTCTTAGCAGTCCAACATTTCTACTCCTGCACTGAGTCTGACTCTGCATATAGAGAAGTCTGTGCTGCTCCTGGCTTCTTCTCAGTTCCTCTCTCAGTTCTGGAACAG
Seq A exon
CTGCAGAATTGCTGTGGAAGTGCTGCAGAAACTCAGTTTTTCTGTGGAAAGGGAGCTAACTTAGAAGTCACCCTCCATACAG
Seq C2 exon
CTTCTCTCACGAAGATCAGTGAGTCTGTTGGGACCAAGAAGTGTGAAAAAAAGCTTGGAAGACTGCAGCAAGGATATTTTTACATTTCCTGTCTGCACCCTGTCAAAGGAGAGGAATGACTTGTAACAGAAGCTGTGGGCTCCTCACTGGGGCTGTCATTGGTGCTGTGCTGGCCATCTTTGGAGGAGTTCTGATACCAGTTGGAGATAACCTCATAAACAGAGCAATAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008439_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0113016=CD36=PU(6.2=70.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGTCTGTGCTGCTCCT
R:
TCTCCTTTGACAGGGTGCAGA
Band lengths:
169-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]