GgaEX1013955 @ galGal4
Exon Skipping
Gene
ENSGALG00000004934 | CDC25A
Description
M-phase inducer phosphatase 1 [Source:RefSeq peptide;Acc:NP_001186501]
Coordinates
chr2:565707-567676:+
Coord C1 exon
chr2:565707-565854
Coord A exon
chr2:566716-566810
Coord C2 exon
chr2:567591-567676
Length
95 bp
Sequences
Splice sites
3' ss Seq
CCTTTGCTGCTTGCTTTTAGATC
3' ss Score
9.71
5' ss Seq
TGGGTAATC
5' ss Score
4.2
Exon sequences
Seq C1 exon
CCATGGATCCCGCACCGGCCGCCTCCTACCGCCGCCGCCTCCTGCACCTCTCTCCGGCTTCCCCCGCCGCCGTGGTCAAGTCTCTCTTTCCCGCCGAGCTCTCGCCGGTCTCAGATCTTCGCCTCACCATGGAGCAGCTGGGACACGG
Seq A exon
ATCGTTCTTATTTCTGTAACCAGCTCTGGGATCCTTCCTGCCTTCAGATTCCAGGGATTCCTGCTAACGACTCCCACCGGGCCCTTCCATGTTGG
Seq C2 exon
TCAGCATGAAAATACTGAACAAGATCTGGGAAACAAGAGTGCAAATGGTTTGCAAAGAACAGTGTCCTCAGAATCAACAGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004934_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGCACCTCTCTCCGG
R:
AGGACACTGTTCTTTGCAAACCA
Band lengths:
178-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]