GgaEX1016186 @ galGal4
Exon Skipping
Gene
ENSGALG00000011068 | COBLL1
Description
cordon-bleu WH2 repeat protein-like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr7:19581822-19586010:+
Coord C1 exon
chr7:19581822-19581885
Coord A exon
chr7:19584408-19584567
Coord C2 exon
chr7:19585831-19586010
Length
160 bp
Sequences
Splice sites
3' ss Seq
GGGTGTGTTTGGACATTTAGGAG
3' ss Score
4.04
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
TTTTTGGGGAAAGTGATCCTTATCAAGAGGAAGTGCTGGCAGTAACTGGAATATCCAGGTCACT
Seq A exon
GAGTTCTGATGAGCTGGGAGAGGCTATGAATAGTTAATTATTCAGCACGGAGTTCTGAAGTTCAAAACTCCAAGTACTTTCAGAAACAGCTCAGTCATGTGAACCCTCGTTACACAGTCATCTTTTGCAATGTTGTTCTGGACCTTGTTTGTTCTTCACT
Seq C2 exon
AAGAAAAGCTAAAGCACCTCCTCCTCCATCTGAAACCAAAACAGTCACTGATTGTCCATTTGATGACACAGAATCAGCCACCATCATCATGGAACAGAAGGAGAATGTAATTGATAAAGACATTGAACTGTCAGTGGTCCTGCCAGGAGATGTGATCAAATACACTACAGTTAATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011068-'12-2,'12-1,13-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=1.000 C2=0.328
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000018021fB6301
Main Skipping Isoform:
ENSGALT00000018021fB6305
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGGGAAAGTGATCCTTATCA
R:
CTCCCATTAACTGTAGTGTATTTGAT
Band lengths:
242-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]