GgaEX1016768 @ galGal4
Exon Skipping
Gene
ENSGALG00000004946 | COL4A4
Description
collagen, type IV, alpha 4 [Source:HGNC Symbol;Acc:HGNC:2206]
Coordinates
chr9:8808461-8809731:-
Coord C1 exon
chr9:8809561-8809731
Coord A exon
chr9:8808972-8809069
Coord C2 exon
chr9:8808461-8808608
Length
98 bp
Sequences
Splice sites
3' ss Seq
TCAATTCACATTCATTTTAGATC
3' ss Score
8.22
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GCTTACCAGGCTTTAAAGGTCAGAAAGGAGACAGGGGCCTAGCTGGGCCACCTGGAATCAAGGGTCTCAAGGGCTCTCCTGGCTCACAGGGCCCCCCAGGTCCTCCAGGGTCCCGAGGACTTCCAGGACTACCAGGCAATAAAGGACAACCTGGCTTTCCAGGTCAAACAG
Seq A exon
ATCAAAATGTTGTTTACCATTCACGGAAAACTACTCAGTCCAGAATTCAAAGTGCACTAAGGCAAGACTAACCTAGTTAGATGAGTGCAGATTACAAG
Seq C2 exon
GAAGCAAAGGGATTCAAGGACCCCAAGGATTCCCTGGACTCCCAGGAACACAAGGCCAAATGGGAATTCCTGGTGTAAAAGGGGAAGAAGGAAACATGGGTCCACCTGGGCCTAGTGGAGAATGTGGGGATATGGGAATGAAAGGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004946_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(46.9=65.5),PF0139113=Collagen=PU(60.0=87.9),PF0139113=Collagen=PU(0.1=0.0)
A:
PF0139113=Collagen=PD(3.2=8.3)
C2:
PF0139113=Collagen=PD(38.8=66.0),PF0139113=Collagen=PU(75.4=98.0)
Main Inclusion Isoform:
ENSGALT00000007918fB6366
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGGGTCTCAAGGGCTCTC
R:
TCCCATTTGGCCTTGTGTTCC
Band lengths:
179-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]