GgaEX1016770 @ galGal4
Exon Skipping
Gene
ENSGALG00000004946 | COL4A4
Description
collagen, type IV, alpha 4 [Source:HGNC Symbol;Acc:HGNC:2206]
Coordinates
chr9:8819477-8821839:-
Coord C1 exon
chr9:8821779-8821839
Coord A exon
chr9:8820198-8820377
Coord C2 exon
chr9:8819477-8819581
Length
180 bp
Sequences
Splice sites
3' ss Seq
CTCATAAATTGTATTTCTAGTGC
3' ss Score
5.68
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGGGATCCTGGAGAAAAAGGGCTCCCCGGTCCTCCTGGAACTCCACTGCTTCCTATGAAAG
Seq A exon
TGCAGCAAATGCTGATTATGAGCACCAAAATAAATCACAACACAATCCTGGTTCAGCAGAACCTCCCCACTGGATAGGAGCTTCAACTAAAATCAACTGGAATTGTTTTCCATTGGCTTCTATGAGTTTCCAGTTTATGCAGCAAAGGATTTAAGCCCATGCTTAGTTCTAGTATCTCAG
Seq C2 exon
GCCCACCAGGAGATCCTGGATTTCCAGGTCCTGCGGGTGACATGGGGTCAGTTGGACCTTCTGGCCCTGTGGGTATGCTAGGAAGACCAGGAGACGATGGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004946_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.840 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(11.4=66.7),PF0139113=Collagen=FE(23.5=100)
A:
NO
C2:
PF0139113=Collagen=FE(41.7=100),PF0139113=Collagen=PU(0.1=0.0)
Main Inclusion Isoform:
ENSGALT00000007918fB6368
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATCCTGGAGAAAAAGGGC
R:
TGTTCCATCGTCTCCTGGTCT
Band lengths:
164-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]