GgaEX1017533 @ galGal4
Exon Skipping
Gene
ENSGALG00000002587 | CRCP
Description
CGRP receptor component [Source:HGNC Symbol;Acc:HGNC:17888]
Coordinates
chr19:4976168-4987818:+
Coord C1 exon
chr19:4976168-4976225
Coord A exon
chr19:4986586-4986709
Coord C2 exon
chr19:4987718-4987818
Length
124 bp
Sequences
Splice sites
3' ss Seq
AGGATCTGCCTGTCTTCCAGGGC
3' ss Score
7.81
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
GGCTGAAAAGCTGCAGTTGCTGAACCACAGGCCTGTGACAGCAGTTGAAATACAGCTG
Seq A exon
GGCTGCTTTCTGCTCTCCAAACTAATGATTCTCCCAACGCCATCAGTGTGCTCTGTTAGTTCTCTTGGAGGCATGGCAGTGTGGAGAGGGCAGCCCATGCGATGTGTCATGTGTACGTGAAAAC
Seq C2 exon
GAACCTGCCCAGAGCTCATAGCTCACAGAGCCAACAGGAGACAAAGTGGTGCATCCCAAAACTGTCAAGGACTGAGATCATAGAATCACAGAGTCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002587_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0387411=RNA_pol_Rpb4=FE(16.7=100),PF149421=Muted=FE(29.7=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGAAAAGCTGCAGTTGC
R:
TGACTCTGTGATTCTATGATCTCAGT
Band lengths:
154-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]