GgaEX1017843 @ galGal4
Exon Skipping
Gene
ENSGALG00000002602 | CSMD2
Description
CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
Coordinates
chr23:4772590-4776197:+
Coord C1 exon
chr23:4772590-4772763
Coord A exon
chr23:4775603-4775692
Coord C2 exon
chr23:4776024-4776197
Length
90 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTACTATCCCTCCAGGTG
3' ss Score
11.49
5' ss Seq
AGGGTAATG
5' ss Score
5.98
Exon sequences
Seq C1 exon
CCGGGCACTGCGGCGTTCCCAGCCCCATCGTCAACGGGCAGATCAACGGCGAGAACTACAACTACCGCGGCAGTGTGGTCTATCAGTGCCAGCCCGGCTTCCGCCTGATCGGGATGTCCGTGCGCATCTGCCAGCAGGACCACCGCTGGTCCGGGAAGACGCCTGTCTGTGTGC
Seq A exon
GTGTAACTTTATACTGCAGTGAGCATCTGACTTACACCAGGCAGGGGGAGGAAAACATCAGGTTTCATGGCTGCGTTTGTGATGCCCAGG
Seq C2 exon
CCATCACTTGTGGCCACCCTGGCAACCCTGCCAACGGCCTGACCCAGGGCACTCAGTTCAACCTGAACGACGTGGCCAAGTTTGTCTGCAACACCGGGTACCGCCTGGAAGGAGCAGCGCAGTCGCAGTGCTTGGCCAACGGGCAGTGGAGCAGCACCCTGCCTGCCTGCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002602-'64-65,'64-64,65-65
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.5)
A:
NO
C2:
PF0008415=Sushi=WD(100=91.5)
Main Inclusion Isoform:
ENSGALT00000004092fB6507
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGTCTATCAGTGCCAGC
R:
CAGGTTGAACTGAGTGCCCTG
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]