GgaEX1018544 @ galGal4
Exon Skipping
Gene
ENSGALG00000011894 | CYP2D6
Description
cytochrome P450 2D3-like [Source:RefSeq peptide;Acc:NP_001182486]
Coordinates
chr1:49268802-49270599:+
Coord C1 exon
chr1:49268802-49268962
Coord A exon
chr1:49269090-49269263
Coord C2 exon
chr1:49270458-49270599
Length
174 bp
Sequences
Splice sites
3' ss Seq
GTATGGTTCTTGCCTACCAGCTT
3' ss Score
5.09
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTCATCCTTTTGATCCACGTTTTCTTGTAAATAATGCAGTCTGCAATGTGATCTGCACCATTACCTATGGAGAGCGTTTCGACTATGGAGACAAGACATTCAAGAAGCTGTTAACTTTGTTTGAAAACTCTCTAAATGAAGAAGCTGGATTCCTGCCTCAG
Seq A exon
CTTCTTAATGTGGCACCTGTTTTGTTGCGCATCCCTGGACTGCCACAGAAGATCTTTCCGTGCCAAAAGGCATACGTAGACTTCACACAAATGCTCATAGATAAGCACAAGGAGACCTGGAACCCTGCTTACATCCGAGACTTCACTGATGCATTTTTAAAGGAAATGGCAAAG
Seq C2 exon
GGTAAGGAGGCTGAAGAGAATGGTTTCAATAAAAGCAACCTTACTCTGGTGACCGCAGACTTACTTGTAGCTGGTTCTGAGACCACCGCCACCACCCTCCGATGGGCGTTCCTGTTCATGCTTTTGTACCCAGAAATACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011894-'4-8,'4-6,5-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.5=100)
A:
PF0006717=p450=FE(12.4=100)
C2:
PF0006717=p450=FE(10.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTCTGCAATGTGATCTGC
R:
AAAGCATGAACAGGAACGCCC
Band lengths:
250-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]