GgaEX1018661 @ galGal4
Exon Skipping
Gene
ENSGALG00000001419 | DAB2IP
Description
DAB2 interacting protein [Source:HGNC Symbol;Acc:HGNC:17294]
Coordinates
chr17:8608811-8610290:+
Coord C1 exon
chr17:8608811-8608870
Coord A exon
chr17:8609876-8610099
Coord C2 exon
chr17:8610126-8610290
Length
224 bp
Sequences
Splice sites
3' ss Seq
ACAAATTAAATAAAGGTTACCTG
3' ss Score
-13.29
5' ss Seq
TCGGTAATT
5' ss Score
7.06
Exon sequences
Seq C1 exon
GAGAAACGCATTGCTTCATTGGATGCTGCCAACGCACGGTTAATGAGTGCCCTTACTCAG
Seq A exon
CTGAGCTTGCTGTCCCCAAGCTGTGAGTGAGGTGCAGGGTCGGGGCGTGTTGCTGGCGCCCGCTGTGGAGGAGAGGGGGAGTGCCAGGCTGCTACGTGGCCAGCTTCATGCTTGACAAAGGGTTCATTATGGGGATGTCATGCTCTGTGCAGAGATTTCTACTGTTTCTGGGGAGGAAAAGAAGGCAAAGAAACAAGAACGGCCATGAAGAACCATGAAGATCG
Seq C2 exon
TATGCATTAGAAAAAAAAAGAGCCCATTTTCTGGAATACTGTCCTCTTTAAATTGGGAATGAGCACTGCATGGAAATTAACCGGCTTGAAGAATGTAAAACATGGTCATAAGGGAGTAACCAGCAGGAACAGCAGCCACCACCGAGAGCCCCCTTGTCAGGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001419_MULTIEX1-12/14=11-13
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF120043=DUF3498=PD(4.7=42.9)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACGCATTGCTTCATTGGATGC
R:
CTCCTGACAAGGGGGCTCTC
Band lengths:
220-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]