GgaEX1019256 @ galGal4
Exon Skipping
Gene
ENSGALG00000001157 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr17:9127087-9149403:-
Coord C1 exon
chr17:9149284-9149403
Coord A exon
chr17:9132474-9132643
Coord C2 exon
chr17:9127087-9127156
Length
170 bp
Sequences
Splice sites
3' ss Seq
GATTTATTCTTTTTTTAAAGGGA
3' ss Score
7.4
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
CCATGCAGTTAGCCAAGTTGGACAGAACTTTACGTTTGTCCTTACAGACATTGACAGCAAACAGAGGTTTGGGTTCTGTCGCTTATCTTCTGGGGCCAAAAGCTGCTTCTGTATCTTAAG
Seq A exon
GGAGTGACCCGCCAGAGTGAAAACAGGAAGTTCCTGACAGCAGAACAGAGCTCGAAGACTATTCTGAAATAAATAGAACAGAAATTATCCTGTCGTACCATTCAGTGAATTTTCTTAAATCTTGCATTGATTGGTAAATCACATGAGAAAGGAATCCAAGGGCACTACAG
Seq C2 exon
TTACCTACCATGGTTTGAAGTCTTTTATAAGCTGCTCAATGTCTTGGCAGATTATTCAGCAAAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157_MULTIEX2-3/19=2-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PD(63.0=70.7),PF0214116=DENN=PU(4.9=22.0)
A:
NO
C2:
PF0214116=DENN=FE(12.6=100)
Main Inclusion Isoform:
ENSGALT00000001740fB6705
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTTAGCCAAGTTGGACA
R:
TGTCCTTTTGCTGAATAATCTGCC
Band lengths:
186-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]