GgaEX1019772 @ galGal4
Exon Skipping
Gene
ENSGALG00000006139 | DIP2B
Description
disco-interacting protein 2 homolog B [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chrLGE22C19W28_E50C23:168182-169521:-
Coord C1 exon
chrLGE22C19W28_E50C23:169402-169521
Coord A exon
chrLGE22C19W28_E50C23:169030-169320
Coord C2 exon
chrLGE22C19W28_E50C23:168182-168296
Length
291 bp
Sequences
Splice sites
3' ss Seq
AAATCTGACTCCTTTTGTAGATA
3' ss Score
7.56
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CAAAAGTTGCTTTAGTCAAGTGTCGAGACTTGCACTGGGCCATGATGGCCCATCGAGACCAAAGAGACGTCAGTTTGAGTTCTCTACGCATGCTGATTGTAACTGACGGTGCAAATCCCT
Seq A exon
ATACTTGCAGAAGACATAAGTTAGGGTAGCTGCCTGGTAACACCAGAGTAGTGGTGTATGGGAACTGCTGAGCTGTGGTCTGAACCACTGATTGAGCATCTGGGAAAAAGACCCGGTCAGCCATAAGAGCACAGGTGAAGGCAGTTCACTCATGGGACAGGAAGGGGTGGAGCCTGGCTGCACCTCTCTTAGACCTCATTTAAGGGCTGACTGCCACTGAGGAAGGATCTCTTTTTGGAGGTCCCTCCTTGCTGAAGCTTCCCTCTGTGTTCCTGGCATCTTCTGATACAG
Seq C2 exon
GGTCTGTTTCCTCATGCGATGCCTTCCTGAGCTTGTTTCAGAGTCATGGGCTTAAACCAGAGGCAATTTGTCCGTGTGCCACATCTCCAGAAGCAATGACTATTGCAATACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139-'32-27,'32-26,33-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(13.1=100)
A:
PF0050123=AMP-binding=PD(1.3=40.0)
C2:
PF0050123=AMP-binding=FE(8.0=100)
Main Inclusion Isoform:
ENSGALT00000009909fB6784
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAAGTTGCTTTAGTCAAGTGTCGA
R:
AGTCATTGCTTCTGGAGATGTGG
Band lengths:
221-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]