GgaEX1020144 @ galGal4
Exon Skipping
Gene
ENSGALG00000004297 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr12:3100062-3101156:+
Coord C1 exon
chr12:3100062-3100238
Coord A exon
chr12:3100593-3100823
Coord C2 exon
chr12:3100986-3101156
Length
231 bp
Sequences
Splice sites
3' ss Seq
ATGCATTTGCTTTGACACAGGTG
3' ss Score
6.83
5' ss Seq
AAGGTGTAG
5' ss Score
2.02
Exon sequences
Seq C1 exon
GTTCTGAAGTACACAGCTGGGGAGATCAACTACGGCGGCCGCGTGACCGATGACTGGGACAGGCGCTGCATGATGAGCATTCTGGAGGATTTCTACAAGCCTGAGGTTCTGATTCCTGAGTTTGCCTATTCTGAATCCGGGATCTACAAGCAGATCAGCACCTCTTCAGACCTCGAT
Seq A exon
GTGCGATTTAACCCCCCAGCCAATGCATGGACTGGGGCCACAGTCTCCATTCAGCCACCAAATGGGGCTCCAAAAGGAGCTGGCACTCCCTCAGCCTCCCCTTCTGCACTAGCCAGCATAACTCAGGGCCCACACACACTGCCCCTAAGTCATACTTGTGAGTGACCTTCCCTGGCTGCCACGTGAGACGAGGAGCTGTGTAAACGTCAGAAGCTCAAGCAATAAGACAAG
Seq C2 exon
GGGTACCTGCAGTACATCAGGAGCCTGCCGCTCAATGACAGCCCGGAGCTCTTTGGTTTGCATGACAATGCCAACATCACCTTTGCTCAGAAGGAGACCTTCACTCTGCTAGGGGCCATTCTGCAGCTGCAACCCAAGACGTTCACACTGGGTGGCTGCAGCAGGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.611 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(15.4=100)
A:
PF0302810=Dynein_heavy=PD(0.1=0.0)
C2:
PF0302810=Dynein_heavy=FE(7.9=100)
Main Inclusion Isoform:
ENSGALT00000006843fB6851
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTACACAGCTGGGGAGA
R:
AATGGCCCCTAGCAGAGTGAA
Band lengths:
293-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]