GgaEX1020158 @ galGal4
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4903766-4906048:-
Coord C1 exon
chr15:4905912-4906048
Coord A exon
chr15:4905011-4905116
Coord C2 exon
chr15:4903766-4903881
Length
106 bp
Sequences
Splice sites
3' ss Seq
CTTTATATTCTCTGTTTCAGTTA
3' ss Score
10.42
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
ATGTGATTCAGAAAAGCAAAACATCCGATCTGGAATCTTCAGACAAAAGAAGTGTTTCAGGTCATGTGTCAGCTCTCTCTAGTGGGTCTGCATTGGGTGAAGTAGAGCAAAGACTTGCAACGGAACACACTACGCAG
Seq A exon
TTAACAGAACAGAAAACTGACAAAGTGTATTTCTATGTGGCTCTTGATGAAATTCCTGAAGAATTTGTATCAGATGCTACTGTATACTTTTTAAGAAACACCGAAG
Seq C2 exon
AAGCAGTTACTGAACCTGATGACCTGATTGAAGCTGATGTGGTTCTTCCTAAAGTGATAGAGTTTGGATTACTGACTGATAGTACTCTTTTGATGCTAAATAATATCTTCTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170_CASSETTE14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGATTCAGAAAAGCAAAACATCCG
R:
TAGCATCAAAAGAGTACTATCAGTCA
Band lengths:
234-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]