GgaEX1020243 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1045673-1049233:+
Coord C1 exon
chr18:1045673-1045741
Coord A exon
chr18:1046969-1047095
Coord C2 exon
chr18:1048978-1049233
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTGTATTTTTTTCCTGCAGGTA
3' ss Score
12.64
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CTGCCTGGACTCTCCTGAAGGAAGAAGGGTGTTGGAGAGGTATGAAGAAATGCTCCAGTTGCTCGACAG
Seq A exon
GTATCAAGAAAAACTGTACATAAACTGGTCCCAGACAGTCTCTGAAAAGTCACAGTACAACCTCACTCAACCACTCATCCGGCGAGAGCCAGAAACCAAACTGCTCACGGTCAATTTTGATCCCCAG
Seq C2 exon
TTGGTTTCAGTGCTGAGAGAGGTGAGCTACTTGTCTGGCAGCCAGATGGGAAGCATCCCACCAACAGCAGCAGAGATCTATTCCTCCAAGGAATCGTACCGACAGATGGTGGCTAATTTGGAGCTCATGGTGAACAGATACAACAAGATCCTGAAGACAGTCCTGGAGGTTGAATACCCTCTAATACAGGAGCAGCTGCGGGATATTGACTTGAAGCTGAAAGAGGCAGAGGAAACATTGAACTGGAAGATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.012
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(12.2=100)
A:
PF083857=DHC_N1=FE(22.3=100)
C2:
PF083857=DHC_N1=FE(45.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCTCCAGTTGCTCGACAG
R:
CCTCTGCCTCTTTCAGCTTCA
Band lengths:
253-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]