GgaEX1020477 @ galGal4
Exon Skipping
Gene
ENSGALG00000001881 | DNLZ
Description
DNL-type zinc finger [Source:HGNC Symbol;Acc:HGNC:33879]
Coordinates
chr17:7919896-7921891:+
Coord C1 exon
chr17:7919896-7919990
Coord A exon
chr17:7920837-7920944
Coord C2 exon
chr17:7921780-7921891
Length
108 bp
Sequences
Splice sites
3' ss Seq
ACTTGGCTTTATTTTCACAGGCC
3' ss Score
8.5
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
GGGAGGCGGATCTTTCTGGGAAGAAAGGAAAAAGCCTGCTGGAGCTGCGTTATGATGAGCACCAGTGATGCCCAAGCCTGGAACAGCAGAGCATG
Seq A exon
GCCTCAGGATCCAAAATCTGCTGCACTCTGGCTCCCTCTCTAGCAAAGTCTAATGGCCTGCTCGCTCCTGCTGTGTTGGAATGAGCTTGCACTGCTGCCTGCTGCTTT
Seq C2 exon
GTACAAGCTAGGTGGGTATATACGTGGCTGTGCACATCCTCCTGCCTGATCTCCAGCTCTCTACCTGGCCCAGGAAGGAGGCAGAGGTTCAGCTCAGCCTTCTGTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001881_MULTIEX2-1/6=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCGGATCTTTCTGGGAAGA
R:
TGCTGCACAGAAGGCTGAG
Band lengths:
203-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]