GgaEX1020504 @ galGal4
Exon Skipping
Gene
ENSGALG00000003164 | DNM3
Description
dynamin 3 [Source:HGNC Symbol;Acc:HGNC:29125]
Coordinates
chr8:4514809-4531202:-
Coord C1 exon
chr8:4530966-4531202
Coord A exon
chr8:4515807-4515877
Coord C2 exon
chr8:4514809-4514869
Length
71 bp
Sequences
Splice sites
3' ss Seq
CTACATACTCTCCTCCCTAGCTT
3' ss Score
6.09
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GTCGCCTCCTCCAAGTCCCTCAACTCAGAGGAGGCCTACATTAAATAATCCTCCCACCAGACCTTTATCTGGCCGAGGACCTGCTCCTGCAATCCCATCTCCAGGCCCTCAGTCAGGGGCTCCCCCGGTCCCATTCCGCCCAGGACCATTGCCACCATTTCCAAGTGGTGGTGAAGCCCATGGAGGACCTCCCCAAGTTCCTTCTCGGCCGACGCGGGCTCCTCCCAGTGTCCCAAG
Seq A exon
CTTTGACCCATTTTCCTCGTGCTGTACAGTGCCTGGAATGTGTTTGTTTGTCCTGCTGGCTCCTGATTCTG
Seq C2 exon
GCGAGCTGATACCGATGGCTCCTCCCGTCCAGACAGTCCTCCACTCTTGCTTGATATATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003164_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.120 C2=0.867
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000005010fB6894
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCAATCCCATCTCCAGG
R:
AGGAGCCATCGGTATCAGCTC
Band lengths:
176-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]