GgaEX1020882 @ galGal4
Exon Skipping
Gene
ENSGALG00000012156 | DPP10
Description
dipeptidyl-peptidase 10 (non-functional) [Source:HGNC Symbol;Acc:HGNC:20823]
Coordinates
chr7:28692505-28694884:-
Coord C1 exon
chr7:28694811-28694884
Coord A exon
chr7:28693431-28693840
Coord C2 exon
chr7:28692505-28692597
Length
410 bp
Sequences
Splice sites
3' ss Seq
TCTCCTTTTTCCTCTGCTAGATC
3' ss Score
10.55
5' ss Seq
AGGGTTAGT
5' ss Score
5.02
Exon sequences
Seq C1 exon
CTAAAGTCCACTTCCAGCATTCAGCAGAACTAATTAAGCATCTAATAAAAGCGGGAGTTAATTACACTATGCAG
Seq A exon
ATCTACCCGGATGAAGGTCATAACATTGCTTCTGAGAAAAGCAAATATCACCTTTACAGCACAATCCTTGGGTTTTTTAGTGCTTGTTTAAAGGAGGAGACGCCAATTTTACCACAGGAACCTGAAGAGGATGAATAAGGAAGCCTATTTGTGTAGTACTGAAGGGGACTTACTTTGTGGCTCAGTAAAACCTTAAATAAAAGTGACTGTGAGATTGCAGATTCTGCAGAAGCTCAAGGGCAGCTAAAGGATATCACAGTGGAACAGCACATTTACAGACAATGAGCTAATAAACTGGAATTCGAATACAAAGTCCAGACGCATTACCAAGGGACAAAACCTTTACCTTTGTGGAAGGTCAACAGTTGGTTACAGTTTCCTGGAAGAACATAGTTTTGCCTAAGTGTAGG
Seq C2 exon
GGCTACTCATCATGTCCCTTGCATGTGGATTTAGATTCTACAACATCTCAAAGAAATGAAATGTTTTTCATTCAAGGCAAAGGAAGATCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012156_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.222 C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=FE(13.6=100)
A:
PF0032616=Peptidase_S9=PD(15.5=69.6)
C2:
PF0032616=Peptidase_S9=PD(1.7=9.7)
Main Inclusion Isoform:
ENSGALT00000019852fB6947
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]