GgaEX1020892 @ galGal4
Exon Skipping
Gene
ENSGALG00000011110 | DPP4
Description
dipeptidyl peptidase 4 [Source:RefSeq peptide;Acc:NP_001026426]
Coordinates
chr7:20651595-20654537:+
Coord C1 exon
chr7:20651595-20651698
Coord A exon
chr7:20653078-20653388
Coord C2 exon
chr7:20654402-20654537
Length
311 bp
Sequences
Splice sites
3' ss Seq
TTTTTTATAACCCTGTACAGTTC
3' ss Score
6.01
5' ss Seq
CCGGTAACC
5' ss Score
5.28
Exon sequences
Seq C1 exon
GCTGGAGCTAAAAATCCAACAGTGAAATTCTTCATTGTGGATATCCAAATGCTTCCTGATTTTAACAGTACTGAAATTTCTCCACCTGCAGAAATAAAATCAGG
Seq A exon
TTCATCCCGTCTGATTGGATGATCTCTACCATCTGAAATTGTTAACTTATCTTACTTTGAAGGAACAAAAACTGTGGGGCTAGTTCCCCTCATAACAAAAGCAAGAAAAACCACTGTTTATTTATTTCCAAACATGCAACACGCTCTTGCAAAGAGGTTTCATAACATTAATGGTCTGTTCTCATTGAAGCAAGTGACAGCAGTGGTGTTCAACGTCCTACCAAATTCCCAGTCAAAAAAAAGTGAAAGAATCTACCTTTTTACAGTGTGATTGCTGAACTGCAGTCTGGAAATAAACCCGAAAGGGGCCG
Seq C2 exon
TGATCATTATTTGAGCGTTGTAACATGGGTAACAGATGAAAGGATCTGCCTGCAGTGGCTCAGAAGAATTCAGAATTATTCAGTCCTCACCATCTGTGACTTTGAAAGTGCAACTGGAAATTGGACGTGTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011110-'9-17,'9-16,10-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(17.8=100)
A:
PF0093016=DPPIV_N=PD(2.6=62.5)
C2:
PF0093016=DPPIV_N=FE(12.2=100)
Main Inclusion Isoform:
ENSGALT00000018100fB6950
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGCTAAAAATCCAACAGTG
R:
ACGTCCAATTTCCAGTTGCACT
Band lengths:
232-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]